Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lyso-ornithine lipid acyltransferase | CLV88_106113 | Not Available | Positive | 2361104 - 2361934 | 31453.5 |
| ssu ribosomal protein s2p | CLV88_106114 | Not Available | Positive | 2362151 - 2362942 | 28122.8 |
| translation elongation factor ts (ef-ts) | CLV88_106115 | Not Available | Positive | 2363008 - 2363883 | 30416.7 |
| luxr family transcriptional regulator | CLV88_106116 | Not Available | Negative | 2364278 - 2365042 | 28879.4 |
| asma-like protein | CLV88_106117 | Not Available | Negative | 2365433 - 2368096 | 94203.0 |
| imidazolonepropionase-like amidohydrolase | CLV88_106118 | Not Available | Negative | 2368416 - 2369807 | 49773.9 |
| hypothetical protein | CLV88_106119 | Not Available | Negative | 2369804 - 2370286 | 17964.8 |
| two-component system phosphate regulon response regulator phob | CLV88_106120 | Not Available | Negative | 2370756 - 2371445 | 25728.1 |
| phou-like phosphate uptake regulator | CLV88_106121 | Not Available | Negative | 2371474 - 2372172 | 26274.7 |
| phosphate abc transporter atp-binding protein (phot family) | CLV88_106122 | Not Available | Negative | 2372187 - 2372987 | 29478.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
