Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lsu ribosomal protein l21p | CLV88_106103 | Not Available | Positive | 2353626 - 2354270 | 22336.9 |
| lsu ribosomal protein l27p | CLV88_106104 | Not Available | Positive | 2354297 - 2354566 | 9464.48 |
| threonine/homoserine/homoserine lactone efflux protein | CLV88_106105 | Not Available | Positive | 2354659 - 2355252 | 20891.9 |
| rimj/riml family protein n-acetyltransferase | CLV88_106106 | Not Available | Positive | 2355264 - 2355809 | 19897.7 |
| gtp-binding protein | CLV88_106107 | Not Available | Positive | 2355874 - 2356911 | 37210.0 |
| glutamate 5-kinase | CLV88_106108 | Not Available | Positive | 2356899 - 2358005 | 38701.4 |
| glutamate-5-semialdehyde dehydrogenase | CLV88_106109 | Not Available | Positive | 2358058 - 2359323 | 44584.3 |
| histidine phosphotransferase chpt | CLV88_106110 | Not Available | Negative | 2359374 - 2359982 | 21845.3 |
| uncharacterized protein duf3553 | CLV88_106111 | Not Available | Positive | 2360012 - 2360194 | 6601.93 |
| ornithine-acyl[acyl carrier protein] n-acyltransferase | CLV88_106112 | Not Available | Positive | 2360328 - 2361107 | 29432.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
