Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| short-subunit dehydrogenase | CLV88_10693 | Not Available | Negative | 2345430 - 2346086 | 22520.2 |
| hypothetical protein | CLV88_10694 | Not Available | Negative | 2346097 - 2346468 | 13928.4 |
| snoal-like protein | CLV88_10695 | Not Available | Negative | 2346489 - 2347031 | 19650.9 |
| snoal-like protein | CLV88_10696 | Not Available | Negative | 2347049 - 2347492 | 15992.7 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | CLV88_10697 | Not Available | Negative | 2347547 - 2348452 | 31482.4 |
| hypothetical protein | CLV88_10698 | Not Available | Negative | 2348508 - 2349413 | 31958.5 |
| lysr family transcriptional regulator | CLV88_10699 | Not Available | Positive | 2349544 - 2350440 | 32412.3 |
| Trna-ser | Not Available | Not Available | Positive | 2350654 - 2350743 | Not Available |
| uncharacterized protein duf2059 | CLV88_106101 | Not Available | Positive | 2350851 - 2351714 | 31656.4 |
| putative cardiolipin synthase | CLV88_106102 | Not Available | Positive | 2351860 - 2353398 | 55747.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
