Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-alanine-dl-glutamate epimerase-like enolase superfamily enzyme | CLV88_10683 | Not Available | Negative | 2335885 - 2337054 | 41926.9 |
| sugar phosphate isomerase/epimerase | CLV88_10684 | Not Available | Negative | 2337120 - 2338007 | 33052.2 |
| d-psicose/d-tagatose/l-ribulose 3-epimerase | CLV88_10685 | Not Available | Positive | 2338298 - 2339164 | 31726.4 |
| sugar phosphate isomerase/epimerase | CLV88_10686 | Not Available | Positive | 2339178 - 2340233 | 39153.6 |
| putative dehydrogenase | CLV88_10687 | Not Available | Positive | 2340286 - 2341407 | 39613.9 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | CLV88_10688 | Not Available | Positive | 2341407 - 2342207 | 28275.7 |
| lysr family glycine cleavage system transcriptional activator | CLV88_10689 | Not Available | Negative | 2342398 - 2343270 | 32325.9 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | CLV88_10690 | Not Available | Positive | 2343394 - 2344101 | 24999.0 |
| putative nadph-quinone reductase | CLV88_10691 | Not Available | Negative | 2344397 - 2345029 | 22974.2 |
| hypothetical protein | CLV88_10692 | Not Available | Negative | 2345026 - 2345424 | 15380.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
