Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein (upf0261 family) | CLV88_10673 | Not Available | Negative | 2326378 - 2327580 | 42292.9 |
| tetr family transcriptional regulator | CLV88_10674 | Not Available | Positive | 2327646 - 2328275 | 22853.5 |
| carbohydrate abc transporter substrate-binding protein (cut1 family) | CLV88_10675 | Not Available | Positive | 2328587 - 2329897 | 48511.0 |
| carbohydrate abc transporter membrane protein 1 (cut1 family) | CLV88_10676 | Not Available | Positive | 2329996 - 2330889 | 33716.1 |
| carbohydrate abc transporter membrane protein 2 (cut1 family) | CLV88_10677 | Not Available | Positive | 2330891 - 2331853 | 35736.3 |
| hypothetical protein | CLV88_10678 | Not Available | Positive | 2331850 - 2332062 | 7895.68 |
| carbohydrate abc transporter atp-binding protein (cut1 family) | CLV88_10679 | Not Available | Positive | 2332062 - 2333147 | 39068.0 |
| carbohydrate abc transporter atp-binding protein (cut1 family) | CLV88_10680 | Not Available | Positive | 2333147 - 2334220 | 38999.3 |
| d-3-phosphoglycerate dehydrogenase | CLV88_10681 | Not Available | Negative | 2334217 - 2335185 | 34389.6 |
| gntr family transcriptional regulator | CLV88_10682 | Not Available | Negative | 2335190 - 2335888 | 26257.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
