Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mannose-binding protein /fructose-binding protein /ribose-binding protein | CLV88_10663 | Not Available | Negative | 2316925 - 2317944 | 34920.4 |
| marr family transcriptional regulator | CLV88_10664 | Not Available | Positive | 2318117 - 2319328 | 44180.2 |
| enoyl-coa hydratase/carnithine racemase | CLV88_10665 | Not Available | Negative | 2319377 - 2320225 | 31376.4 |
| short-subunit dehydrogenase | CLV88_10666 | Not Available | Negative | 2320300 - 2321088 | 27414.9 |
| luciferase-type oxidoreductase | CLV88_10667 | Not Available | Negative | 2321102 - 2322067 | 34702.3 |
| hypothetical protein | CLV88_10668 | Not Available | Negative | 2322080 - 2322856 | 29216.3 |
| dna-binding transcriptional lysr family regulator | CLV88_10669 | Not Available | Positive | 2322965 - 2323885 | 32890.6 |
| xaa-pro aminopeptidase | CLV88_10670 | Not Available | Negative | 2323913 - 2325106 | 43078.1 |
| cupin domain-containing protein | CLV88_10671 | Not Available | Negative | 2325109 - 2325534 | 15271.9 |
| putative tim-barrel enzyme | CLV88_10672 | Not Available | Negative | 2325536 - 2326375 | 29149.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
