Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| laci family transcriptional regulator | CLV88_10653 | Not Available | Positive | 2307790 - 2308812 | 37127.8 |
| mannose/cellobiose epimerase-like protein (n-acyl-d-glucosamine 2-epimerase family) | CLV88_10654 | Not Available | Positive | 2308830 - 2310062 | 46089.9 |
| hypothetical protein | CLV88_10655 | Not Available | Negative | 2310098 - 2310385 | 9711.12 |
| hypothetical protein | CLV88_10656 | Not Available | Negative | 2310375 - 2311415 | 38385.1 |
| hypothetical protein | CLV88_10657 | Not Available | Negative | 2311412 - 2311807 | 14097.3 |
| fad/fmn-containing dehydrogenase | CLV88_10658 | Not Available | Negative | 2311804 - 2313261 | 52958.8 |
| transaldolase | CLV88_10659 | Not Available | Negative | 2313454 - 2314107 | 23119.6 |
| fructokinase | CLV88_10660 | Not Available | Negative | 2314287 - 2314955 | 24681.7 |
| mannose abc transporter atp-binding protein /fructose abc transporter atp-binding protein /ribose abc transporter atp-binding protein | CLV88_10661 | Not Available | Negative | 2314952 - 2315734 | 28408.7 |
| mannose abc transporter membrane protein /fructose abc transporter membrane protein /ribose abc transporter membrane protein | CLV88_10662 | Not Available | Negative | 2315734 - 2316804 | 37678.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
