Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_10633 | Not Available | Negative | 2287530 - 2288954 | 51837.5 |
| hypothetical protein | CLV88_10634 | Not Available | Positive | 2288956 - 2289198 | 8646.31 |
| arylsulfatase | CLV88_10635 | Not Available | Positive | 2289227 - 2290876 | 61186.2 |
| abc transporter transmembrane protein | CLV88_10636 | Not Available | Positive | 2290966 - 2291931 | 35875.9 |
| acetyltransferase (gnat) family protein | CLV88_10637 | Not Available | Positive | 2291942 - 2292427 | 18007.7 |
| uncharacterized protein ycbk (duf882 family) | CLV88_10638 | Not Available | Negative | 2292523 - 2293092 | 20641.7 |
| murein l,d-transpeptidase ycbb/ykud | CLV88_10639 | Not Available | Positive | 2293448 - 2295055 | 60828.0 |
| udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase | CLV88_10640 | Not Available | Positive | 2295086 - 2296177 | 37559.1 |
| acyl carrier protein | CLV88_10641 | Not Available | Positive | 2296211 - 2296468 | 9095.7 |
| 3-oxoacyl-[acyl-carrier-protein] synthase ii | CLV88_10642 | Not Available | Positive | 2296483 - 2297691 | 42222.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
