Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cysteine desulfurase | CLV88_10623 | Not Available | Positive | 2279852 - 2280904 | 36081.0 |
| iron-regulated abc transporter membrane component sufb | CLV88_10624 | Not Available | Positive | 2280928 - 2282463 | 57256.4 |
| hypothetical protein | CLV88_10625 | Not Available | Positive | 2282467 - 2282670 | 6995.69 |
| uncharacterized protein ybjq (upf0145 family) | CLV88_10626 | Not Available | Positive | 2282672 - 2282986 | 10787.0 |
| fe-s cluster assembly atp-binding protein | CLV88_10627 | Not Available | Positive | 2283042 - 2283797 | 27285.1 |
| fe-s cluster assembly protein sufd | CLV88_10628 | Not Available | Positive | 2283797 - 2285083 | 47081.3 |
| hypothetical protein | CLV88_10629 | Not Available | Positive | 2285083 - 2285568 | 17628.3 |
| yip1-like protein | CLV88_10630 | Not Available | Positive | 2285565 - 2286146 | 20894.8 |
| cysteine desulfurase | CLV88_10631 | Not Available | Positive | 2286147 - 2287367 | 43443.9 |
| Trna-arg | Not Available | Not Available | Positive | 2287421 - 2287497 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
