Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate--putrescine ligase | CLV88_101197 | Not Available | Positive | 195069 - 196385 | 47626.7 |
| gmp synthase (glutamine-hydrolysing) | CLV88_101198 | Not Available | Positive | 196417 - 197100 | 24584.9 |
| glutamine synthetase | CLV88_101199 | Not Available | Positive | 197097 - 198455 | 50580.9 |
| gamma-glutamylputrescine oxidase | CLV88_101200 | Not Available | Positive | 198525 - 199829 | 46714.9 |
| hypothetical protein | CLV88_101201 | Not Available | Positive | 199865 - 200017 | 5885.12 |
| dtdp-4-amino-4,6-dideoxygalactose transaminase | CLV88_101202 | Not Available | Positive | 199986 - 201203 | 44412.3 |
| polyhydroxyalkanoate synthesis repressor phar | CLV88_101203 | Not Available | Negative | 201252 - 201788 | 19953.7 |
| phasin protein | CLV88_101204 | Not Available | Negative | 201928 - 202371 | 15419.2 |
| polyhydroxyalkanoate synthase | CLV88_101205 | Not Available | Negative | 202505 - 204298 | 67965.2 |
| poly(3-hydroxybutyrate) depolymerase | CLV88_101206 | Not Available | Positive | 204412 - 205686 | 46837.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
