Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| neurotransmitter-gated ion-channel | CLV88_10613 | Not Available | Negative | 2271219 - 2272274 | 40303.3 |
| gtp-binding protein | CLV88_10614 | Not Available | Negative | 2272393 - 2274213 | 66454.5 |
| small multidrug resistance pump | CLV88_10615 | Not Available | Negative | 2274285 - 2274620 | 11960.4 |
| putative 5xtm membrane yitt family protein | CLV88_10616 | Not Available | Negative | 2274630 - 2275250 | 21959.3 |
| glycerophosphoryl diester phosphodiesterase | CLV88_10617 | Not Available | Positive | 2275381 - 2277216 | 65958.3 |
| hypothetical protein | CLV88_10618 | Not Available | Positive | 2277200 - 2277742 | 19709.2 |
| putative hydrolase of hd superfamily | CLV88_10619 | Not Available | Negative | 2277744 - 2278328 | 21686.5 |
| hypothetical protein | CLV88_10620 | Not Available | Negative | 2278325 - 2278555 | 8376.05 |
| hypothetical protein | CLV88_10621 | Not Available | Negative | 2278555 - 2279211 | 24318.8 |
| badm/rrf2 family transcriptional regulator | CLV88_10622 | Not Available | Positive | 2279373 - 2279852 | 16839.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
