Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane fusion protein (multidrug efflux system)/multidrug efflux system membrane fusion protein | CLV88_105236 | Not Available | Positive | 2231552 - 2232649 | 38523.2 |
| hydrophobe/amphiphile efflux-1 (hae1) family protein | CLV88_105237 | Not Available | Positive | 2232662 - 2235775 | 110318.0 |
| hypothetical protein | CLV88_105238 | Not Available | Positive | 2235790 - 2236380 | 21767.8 |
| asma-like protein | CLV88_105239 | Not Available | Positive | 2236423 - 2239077 | 96320.7 |
| ca2+:h+ antiporter | CLV88_105240 | Not Available | Negative | 2239095 - 2240222 | 39487.5 |
| putative mfs family arabinose efflux permease | CLV88_105241 | Not Available | Negative | 2240222 - 2241532 | 46413.1 |
| feruloyl esterase | CLV88_105242 | Not Available | Positive | 2241791 - 2243383 | 56426.5 |
| uncharacterized protein duf3124 | CLV88_105243 | Not Available | Negative | 2243475 - 2243978 | 18340.1 |
| hypothetical protein | CLV88_105244 | Not Available | Positive | 2244562 - 2245686 | 42456.5 |
| hypothetical protein | CLV88_105245 | Not Available | Positive | 2245670 - 2246713 | 39771.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
