Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fur family iron response transcriptional regulator | CLV88_105227 | Not Available | Negative | 2221784 - 2222194 | 15088.8 |
| 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase | CLV88_105228 | Not Available | Positive | 2222369 - 2222878 | 18557.5 |
| 3-oxoacyl-[acyl-carrier-protein] synthase i | CLV88_105229 | Not Available | Positive | 2222916 - 2224145 | 42270.2 |
| enoyl-[acyl-carrier-protein] reductase | CLV88_105230 | Not Available | Positive | 2224153 - 2224944 | 28107.6 |
| d-tyrosyl-trna(tyr) deacylase | CLV88_105231 | Not Available | Positive | 2224979 - 2225416 | 15512.6 |
| hydroxypyruvate reductase | CLV88_105232 | Not Available | Positive | 2225559 - 2226671 | 38245.3 |
| fatty-acyl-coa synthase/long-chain acyl-coa synthetase | CLV88_105233 | Not Available | Negative | 2226757 - 2228643 | 68376.0 |
| atp-binding cassette subfamily b protein | CLV88_105234 | Not Available | Negative | 2228820 - 2230613 | 64340.8 |
| Trna-gly | Not Available | Not Available | Positive | 2230757 - 2230830 | Not Available |
| Trna-asn | Not Available | Not Available | Positive | 2230900 - 2230971 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
