Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methionine adenosyltransferase | CLV88_105216 | Not Available | Negative | 2211883 - 2213064 | 42301.7 |
| apolipoprotein n-acyltransferase | CLV88_105218 | Not Available | Negative | 2213156 - 2214661 | 54468.3 |
| magnesium and cobalt transporter | CLV88_105219 | Not Available | Negative | 2214654 - 2215541 | 32224.6 |
| putative rrna maturation factor | CLV88_105220 | Not Available | Negative | 2215572 - 2216072 | 18035.3 |
| phosphate starvation-inducible protein phoh | CLV88_105221 | Not Available | Negative | 2216103 - 2217143 | 38178.8 |
| hypothetical protein | CLV88_105222 | Not Available | Negative | 2217293 - 2217589 | 10323.3 |
| ompa family protein | CLV88_105223 | Not Available | Negative | 2217602 - 2218177 | 20771.7 |
| pp_02211 | CLV88_105224 | Not Available | Negative | 2218415 - 2219734 | Not Available |
| hypothetical protein | CLV88_105225 | Not Available | Positive | 2219843 - 2220712 | 33474.5 |
| nadph2:quinone reductase | CLV88_105226 | Not Available | Negative | 2220725 - 2221714 | 34405.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
