Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phospholipid methyltransferase | CLV88_105206 | Not Available | Positive | 2202087 - 2202770 | 25530.2 |
| integrase-like protein | CLV88_105207 | Not Available | Negative | 2203011 - 2203325 | 11682.0 |
| hypothetical protein | CLV88_105208 | Not Available | Negative | 2203398 - 2203961 | 20428.5 |
| 4-coumarate--coa ligase | CLV88_105209 | Not Available | Positive | 2204113 - 2205666 | 54850.8 |
| kap-like p-loop domain-containing protein | CLV88_105210 | Not Available | Negative | 2205729 - 2207123 | 51457.9 |
| aryl-alcohol dehydrogenase-like predicted oxidoreductase | CLV88_105211 | Not Available | Negative | 2207277 - 2208275 | 36215.1 |
| cytidylate kinase | CLV88_105212 | Not Available | Negative | 2208279 - 2208893 | 21517.5 |
| hypothetical protein | CLV88_105213 | Not Available | Negative | 2208953 - 2209459 | 18620.8 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | CLV88_105214 | Not Available | Negative | 2209608 - 2210960 | 46795.0 |
| trna (guanine-n(7)-)-methyltransferase | CLV88_105215 | Not Available | Negative | 2211051 - 2211764 | 27086.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
