Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter membrane protein 1 (cut1 family) | CLV88_105196 | Not Available | Negative | 2192683 - 2193621 | 34757.1 |
| gntr family transcriptional regulator | CLV88_105197 | Not Available | Positive | 2193825 - 2194580 | 27457.5 |
| hexosaminidase | CLV88_105198 | Not Available | Positive | 2194549 - 2196363 | 65779.3 |
| phosphoribosylanthranilate isomerase | CLV88_105199 | Not Available | Negative | 2196380 - 2197045 | 23280.1 |
| uncharacterized protein duf1049 | CLV88_105200 | Not Available | Negative | 2197084 - 2197434 | 12955.0 |
| integration host factor subunit beta | CLV88_105201 | Not Available | Negative | 2197438 - 2197719 | 10770.9 |
| putative glutathione s-transferase | CLV88_105202 | Not Available | Positive | 2198050 - 2199114 | 39632.8 |
| type vi secretion system vasi family protein | CLV88_105203 | Not Available | Negative | 2199128 - 2199799 | 25153.8 |
| hypothetical protein | CLV88_105204 | Not Available | Negative | 2199859 - 2199954 | 3368.31 |
| ssu ribosomal protein s1p | CLV88_105205 | Not Available | Negative | 2199996 - 2201675 | 61186.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
