Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_105186 | Not Available | Positive | 2182096 - 2182467 | 13373.7 |
| tryptophan synthase beta chain | CLV88_105187 | Not Available | Negative | 2182537 - 2183823 | 46676.7 |
| n-acetylglucosamine 6-phosphate deacetylase | CLV88_105188 | Not Available | Negative | 2183906 - 2185033 | 39045.4 |
| tagatose-bisphosphate aldolase noncatalytic subunit | CLV88_105189 | Not Available | Negative | 2185030 - 2186259 | 44218.3 |
| n-acetylglucosamine kinase | CLV88_105190 | Not Available | Negative | 2186256 - 2187155 | 30437.7 |
| tagatose-6-phosphate ketose/aldose isomerase | CLV88_105191 | Not Available | Negative | 2187152 - 2188204 | 37219.0 |
| putative dehydrogenase | CLV88_105192 | Not Available | Negative | 2188295 - 2189431 | 41866.1 |
| carbohydrate abc transporter atp-binding protein (cut1 family) | CLV88_105193 | Not Available | Negative | 2189431 - 2190528 | 39066.1 |
| carbohydrate abc transporter substrate-binding protein (cut1 family) | CLV88_105194 | Not Available | Negative | 2190606 - 2191814 | 43082.2 |
| carbohydrate abc transporter membrane protein 2 (cut1 family) | CLV88_105195 | Not Available | Negative | 2191844 - 2192686 | 31747.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
