Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lsu ribosomal protein l25p | CLV88_105176 | Not Available | Positive | 2172798 - 2173442 | 22972.3 |
| ribonuclease bn (trna processing enzyme) | CLV88_105177 | Not Available | Negative | 2173554 - 2174999 | 53782.2 |
| hypothetical protein | CLV88_105178 | Not Available | Negative | 2175041 - 2175568 | 18977.0 |
| fkbm family methyltransferase | CLV88_105179 | Not Available | Negative | 2175767 - 2176453 | 25245.5 |
| peptidyl-trna hydrolase | CLV88_105180 | Not Available | Positive | 2176541 - 2177233 | 25007.0 |
| hypothetical protein | CLV88_105181 | Not Available | Positive | 2177230 - 2178279 | 37765.9 |
| hypothetical protein | CLV88_105182 | Not Available | Positive | 2178344 - 2179510 | 42083.3 |
| hypothetical protein | CLV88_105183 | Not Available | Negative | 2179622 - 2179807 | 6867.41 |
| hypothetical protein | CLV88_105184 | Not Available | Negative | 2180060 - 2180218 | 5843.33 |
| fad dependent oxidoreductase | CLV88_105185 | Not Available | Negative | 2180616 - 2181983 | 49369.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
