Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cupin domain-containing protein | CLV88_105166 | Not Available | Positive | 2163794 - 2164261 | 17197.4 |
| organic hydroperoxide reductase osmc/ohra | CLV88_105167 | Not Available | Positive | 2164331 - 2165512 | 42632.9 |
| hypothetical protein | CLV88_105168 | Not Available | Positive | 2165528 - 2165794 | 9501.76 |
| hypothetical protein | CLV88_105169 | Not Available | Negative | 2165876 - 2166973 | 39459.2 |
| phnb protein | CLV88_105170 | Not Available | Positive | 2167067 - 2167480 | 14950.8 |
| lipid a 3-o-deacylase pagl | CLV88_105171 | Not Available | Positive | 2167611 - 2168096 | 17552.5 |
| tryptophan synthase alpha chain | CLV88_105172 | Not Available | Positive | 2168181 - 2168972 | 27293.6 |
| trimethylamine:corrinoid methyltransferase-like protein | CLV88_105173 | Not Available | Positive | 2169112 - 2170680 | 56182.2 |
| l-lactate dehydrogenase (cytochrome) | CLV88_105174 | Not Available | Positive | 2170807 - 2171973 | 42906.6 |
| hypothetical protein | CLV88_105175 | Not Available | Positive | 2172001 - 2172669 | 25190.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
