Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative membrane protein yfca | CLV88_105156 | Not Available | Positive | 2154094 - 2154819 | 26131.8 |
| gntr family transcriptional regulator | CLV88_105157 | Not Available | Negative | 2154841 - 2155599 | 28448.1 |
| trap-type c4-dicarboxylate transport system substrate-binding protein | CLV88_105158 | Not Available | Positive | 2155855 - 2156865 | 36174.0 |
| trap-type c4-dicarboxylate transport system substrate-binding protein | CLV88_105159 | Not Available | Positive | 2156925 - 2157944 | 36885.8 |
| gst-like protein | CLV88_105160 | Not Available | Positive | 2158077 - 2158838 | 28826.4 |
| trap-type c4-dicarboxylate transport system permease small subunit | CLV88_105161 | Not Available | Positive | 2158853 - 2159392 | 19642.6 |
| tripartite atp-independent transporter dctm subunit | CLV88_105162 | Not Available | Positive | 2159389 - 2160750 | 48317.3 |
| acyl-coa reductase-like nad-dependent aldehyde dehydrogenase | CLV88_105163 | Not Available | Positive | 2160767 - 2162203 | 51644.6 |
| glutathione s-transferase | CLV88_105164 | Not Available | Positive | 2162200 - 2163021 | 30654.5 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | CLV88_105165 | Not Available | Positive | 2163036 - 2163791 | 25984.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
