Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diacylglycerol kinase (atp) | CLV88_105136 | Not Available | Negative | 2131887 - 2132243 | 12868.8 |
| iron-binding cdgsh zinc finger protein | CLV88_105137 | Not Available | Positive | 2132358 - 2133056 | 26171.2 |
| hypothetical protein | CLV88_105138 | Not Available | Positive | 2133133 - 2134317 | 42447.2 |
| udp-n-acetylmuramoylalanine--d-glutamate ligase | CLV88_105139 | Not Available | Negative | 2134314 - 2135714 | 48863.1 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | CLV88_105140 | Not Available | Negative | 2135851 - 2136933 | 38728.3 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | CLV88_105141 | Not Available | Negative | 2136934 - 2138349 | 49643.6 |
| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase | CLV88_105142 | Not Available | Negative | 2138373 - 2139854 | 51666.2 |
| cell division protein ftsi (penicillin-binding protein 3) | CLV88_105143 | Not Available | Negative | 2139875 - 2141659 | 64674.0 |
| hypothetical protein | CLV88_105144 | Not Available | Negative | 2141656 - 2142003 | 13102.7 |
| 16s rrna (cytosine1402-n4)-methyltransferase | CLV88_105145 | Not Available | Negative | 2142003 - 2143010 | 36476.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
