Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glyceraldehyde-3-phosphate dehydrogenase (nad+) | CLV88_105126 | Not Available | Positive | 2121707 - 2122705 | 35701.5 |
| hypothetical protein | CLV88_105127 | Not Available | Positive | 2122795 - 2122938 | 5272.59 |
| abc-2 type transport system permease protein | CLV88_105128 | Not Available | Negative | 2122953 - 2123753 | 28542.9 |
| gcra cell cycle regulator | CLV88_105129 | Not Available | Positive | 2123960 - 2124547 | 21089.5 |
| prephenate dehydrogenase | CLV88_105130 | Not Available | Negative | 2124621 - 2125367 | 26496.8 |
| bcr/cfla subfamily drug resistance transporter | CLV88_105131 | Not Available | Negative | 2125558 - 2126757 | 41900.6 |
| asma protein | CLV88_105132 | Not Available | Negative | 2126778 - 2128673 | 65093.8 |
| hypothetical protein | CLV88_105133 | Not Available | Negative | 2129140 - 2129547 | 15452.7 |
| ssu ribosomal protein s12p methylthiotransferase | CLV88_105134 | Not Available | Positive | 2129625 - 2131028 | 51240.8 |
| hypothetical protein | CLV88_105135 | Not Available | Positive | 2131094 - 2131876 | 28782.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
