Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response ompr family regulator | CLV88_105116 | Not Available | Positive | 2111720 - 2112787 | 39545.9 |
| n-acyl-l-homoserine lactone synthetase | CLV88_105117 | Not Available | Negative | 2112846 - 2113433 | 21680.4 |
| hypothetical protein | CLV88_105118 | Not Available | Positive | 2113544 - 2113717 | 6421.69 |
| hypothetical protein | CLV88_105119 | Not Available | Positive | 2114017 - 2114400 | 14394.3 |
| phospho-acceptor domain-containing protein | CLV88_105120 | Not Available | Positive | 2114516 - 2115946 | 54071.1 |
| hpt domain-containing protein | CLV88_105121 | Not Available | Positive | 2115966 - 2116301 | 12029.6 |
| response regulator receiver domain-containing protein | CLV88_105122 | Not Available | Negative | 2116298 - 2116678 | 13594.5 |
| isoquinoline 1-oxidoreductase beta subunit | CLV88_105123 | Not Available | Negative | 2116833 - 2119073 | 79823.9 |
| isoquinoline 1-oxidoreductase alpha subunit | CLV88_105124 | Not Available | Negative | 2119077 - 2119535 | 16159.3 |
| hypothetical protein | CLV88_105125 | Not Available | Negative | 2119696 - 2121294 | 56107.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
