Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| precorrin-8x methylmutase | CLV88_105106 | Not Available | Positive | 2103309 - 2103938 | 22473.0 |
| precorrin-2 c20-methyltransferase | CLV88_105107 | Not Available | Positive | 2103935 - 2104666 | 26623.2 |
| precorrin-3 methyltransferase | CLV88_105108 | Not Available | Positive | 2104663 - 2105415 | 26993.5 |
| precorrin-6a reductase | CLV88_105109 | Not Available | Negative | 2105388 - 2106143 | 26525.0 |
| precorrin-6y c5,15-methyltransferase (decarboxylating) | CLV88_105110 | Not Available | Positive | 2106244 - 2107341 | 38694.3 |
| cobalt-precorrin 5a hydrolase | CLV88_105111 | Not Available | Positive | 2107338 - 2107703 | 12253.8 |
| precorrin-4 c11-methyltransferase | CLV88_105112 | Not Available | Positive | 2107700 - 2108494 | 27983.2 |
| cobyrinic acid a,c-diamide synthase | CLV88_105113 | Not Available | Positive | 2108600 - 2109916 | 46084.9 |
| uroporphyrinogen-iii c-methyltransferase | CLV88_105114 | Not Available | Positive | 2109913 - 2110632 | 25009.9 |
| precorrin-6a synthase (deacetylating) | CLV88_105115 | Not Available | Positive | 2110654 - 2111406 | 27436.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
