Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heme-degrading monooxygenase hmoa | CLV88_10585 | Not Available | Negative | 2084784 - 2085152 | 13466.0 |
| marr family transcriptional regulator | CLV88_10586 | Not Available | Positive | 2085254 - 2085742 | 18117.8 |
| eama-like transporter family protein | CLV88_10587 | Not Available | Negative | 2085886 - 2086785 | 31244.2 |
| fatty acid desaturase | CLV88_10588 | Not Available | Negative | 2086806 - 2087702 | 34594.9 |
| putative membrane protein duf2061 | CLV88_10589 | Not Available | Negative | 2087710 - 2087916 | 7363.35 |
| helix-turn-helix protein | CLV88_10590 | Not Available | Positive | 2088025 - 2088882 | 32103.2 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | CLV88_10591 | Not Available | Negative | 2088879 - 2089637 | 26031.1 |
| carnitine 3-dehydrogenase | CLV88_10592 | Not Available | Negative | 2089634 - 2091106 | 53905.7 |
| lysophospholipase l1-like esterase | CLV88_10593 | Not Available | Negative | 2091103 - 2091744 | 22561.3 |
| hypothetical protein | CLV88_10594 | Not Available | Negative | 2091748 - 2092182 | 15741.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
