Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative membrane protein | CLV88_101177 | Not Available | Positive | 179801 - 180559 | 28048.1 |
| hypothetical protein | CLV88_101178 | Not Available | Positive | 180603 - 181007 | 14719.5 |
| uncharacterized protein duf2842 | CLV88_101179 | Not Available | Negative | 181088 - 181318 | 8380.61 |
| adenylosuccinate synthetase | CLV88_101180 | Not Available | Negative | 181359 - 182672 | 47296.5 |
| hypothetical protein | CLV88_101181 | Not Available | Positive | 182815 - 183210 | 14957.7 |
| nitrile hydratase accessory protein | CLV88_101182 | Not Available | Negative | 183324 - 183647 | 11731.6 |
| nitrile hydratase | CLV88_101183 | Not Available | Negative | 183644 - 184318 | 24266.3 |
| nitrile hydratase | CLV88_101184 | Not Available | Negative | 184315 - 184929 | 22759.5 |
| hypothetical protein | CLV88_101185 | Not Available | Negative | 185021 - 185335 | 11344.5 |
| protein translocase subunit secg | CLV88_101186 | Not Available | Positive | 185557 - 185919 | 11806.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
