Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| guanine deaminase | CLV88_10565 | Not Available | Negative | 2064055 - 2065350 | 47529.4 |
| agza family xanthine/uracil permease-like mfs transporter | CLV88_10566 | Not Available | Negative | 2065405 - 2066982 | 54782.8 |
| xanthine dehydrogenase accessory factor | CLV88_10567 | Not Available | Negative | 2067071 - 2067901 | 29105.1 |
| xanthine dehydrogenase molybdenum binding subunit apoprotein | CLV88_10568 | Not Available | Negative | 2067901 - 2070207 | 84204.6 |
| xanthine dehydrogenase small subunit | CLV88_10569 | Not Available | Negative | 2070219 - 2071670 | 51765.1 |
| dna-binding transcriptional lysr family regulator | CLV88_10570 | Not Available | Positive | 2071834 - 2072751 | 34287.4 |
| diguanylate cyclase (ggdef)-like protein | CLV88_10571 | Not Available | Negative | 2072780 - 2073814 | 37380.5 |
| heme-no-binding protein | CLV88_10572 | Not Available | Negative | 2073789 - 2074376 | 21691.0 |
| uncharacterized protein duf4153 | CLV88_10573 | Not Available | Negative | 2074440 - 2076182 | 62357.5 |
| trimethylamine--corrinoid protein co-methyltransferase | CLV88_10574 | Not Available | Negative | 2076306 - 2077868 | 57388.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
