Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| biotin carboxyl carrier protein | CLV88_10555 | Not Available | Positive | 2054955 - 2055455 | 17099.2 |
| acetyl-coa carboxylase biotin carboxylase subunit | CLV88_10556 | Not Available | Positive | 2055465 - 2056817 | 48915.4 |
| leucyl/phenylalanyl-trna--protein transferase | CLV88_10557 | Not Available | Positive | 2056838 - 2057473 | 23895.7 |
| hypothetical protein | CLV88_10558 | Not Available | Negative | 2057419 - 2057892 | 16625.6 |
| phospholipid/cholesterol/gamma-hch transport system substrate-binding protein | CLV88_10559 | Not Available | Negative | 2057889 - 2058338 | 15061.7 |
| nadh:ubiquinone oxidoreductase subunit | CLV88_10560 | Not Available | Negative | 2058342 - 2058725 | 14484.8 |
| atp-dependent clp protease atp-binding subunit clpx | CLV88_10561 | Not Available | Negative | 2058935 - 2060200 | 45779.9 |
| atp-dependent clp protease proteolytic subunit clpp | CLV88_10562 | Not Available | Negative | 2060338 - 2060967 | 23198.9 |
| dna-3-methyladenine glycosylase i | CLV88_10563 | Not Available | Positive | 2061254 - 2061916 | 24226.8 |
| 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | CLV88_10564 | Not Available | Negative | 2061971 - 2063926 | 69919.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
