Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_10535 | Not Available | Positive | 2036116 - 2036232 | 4767.79 |
| adenine phosphoribosyltransferase | CLV88_10536 | Not Available | Positive | 2036337 - 2036876 | 19612.0 |
| fad/fmn-containing dehydrogenase | CLV88_10537 | Not Available | Negative | 2036935 - 2038365 | 50856.3 |
| l-ascorbate metabolism protein ulag (beta-lactamase superfamily) | CLV88_10538 | Not Available | Negative | 2038378 - 2039190 | 29350.3 |
| ribosomal-protein-alanine n-acetyltransferase | CLV88_10539 | Not Available | Negative | 2039458 - 2040048 | 22613.2 |
| putative zn-dependent peptidase | CLV88_10540 | Not Available | Negative | 2040048 - 2041310 | 46176.8 |
| threonine synthase | CLV88_10541 | Not Available | Negative | 2041307 - 2042695 | 50601.3 |
| surfeit locus 1 family protein | CLV88_10542 | Not Available | Negative | 2042701 - 2043378 | 24908.0 |
| cytochrome c oxidase subunit 3 | CLV88_10543 | Not Available | Negative | 2043485 - 2044285 | 30256.1 |
| cytochrome c oxidase assembly protein subunit 11 | CLV88_10544 | Not Available | Negative | 2044317 - 2044892 | 21309.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
