Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulp family sulfate permease | CLV88_10525 | Not Available | Negative | 2025638 - 2027308 | 58520.2 |
| hypothetical protein | CLV88_10526 | Not Available | Negative | 2027572 - 2028939 | 49202.7 |
| hypothetical protein | CLV88_10527 | Not Available | Positive | 2029066 - 2029296 | 8826.28 |
| arylsulfatase | CLV88_10528 | Not Available | Positive | 2029339 - 2031096 | 64025.1 |
| multidrug resistance efflux pump | CLV88_10529 | Not Available | Positive | 2031363 - 2032472 | 39456.9 |
| hypothetical protein | CLV88_10530 | Not Available | Positive | 2032862 - 2033422 | 20693.3 |
| methylthioadenosine phosphorylase | CLV88_10531 | Not Available | Positive | 2033616 - 2034491 | 31080.9 |
| hypothetical protein | CLV88_10532 | Not Available | Positive | 2034488 - 2034931 | 15884.4 |
| hypothetical protein | CLV88_10533 | Not Available | Negative | 2034890 - 2035126 | 8321.9 |
| threonine/homoserine/homoserine lactone efflux protein | CLV88_10534 | Not Available | Positive | 2035170 - 2035799 | 22006.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
