Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_10515 | Not Available | Positive | 2016508 - 2017512 | 38600.0 |
| aspartate kinase | CLV88_10516 | Not Available | Positive | 2017695 - 2018933 | 44457.2 |
| phosphotransferase system enzyme i (ptsp) | CLV88_10517 | Not Available | Positive | 2018992 - 2021235 | 82157.4 |
| complex i intermediate-associated protein 30 (cia30) | CLV88_10518 | Not Available | Negative | 2021232 - 2021795 | 20582.4 |
| tspo/mbr related protein | CLV88_10519 | Not Available | Negative | 2021806 - 2022270 | 17329.7 |
| hypothetical protein | CLV88_10520 | Not Available | Negative | 2022298 - 2022813 | 17859.2 |
| ecsc family protein | CLV88_10521 | Not Available | Negative | 2022943 - 2023725 | 27204.7 |
| putative n-acetyltransferase yhbs | CLV88_10522 | Not Available | Negative | 2023754 - 2024248 | 18132.6 |
| flavin reductase (dim6/ntab) family nadh-fmn oxidoreductase rutf | CLV88_10523 | Not Available | Positive | 2024337 - 2024942 | 22177.3 |
| virginiamycin a acetyltransferase | CLV88_10524 | Not Available | Positive | 2024945 - 2025583 | 22848.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
