Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr family transcriptional regulator | CLV88_1055 | Not Available | Negative | 2007234 - 2007815 | 21915.4 |
| glyoxylase-like metal-dependent hydrolase (beta-lactamase superfamily ii) | CLV88_1056 | Not Available | Negative | 2008351 - 2009295 | 32817.1 |
| tetr family transcriptional regulator | CLV88_1057 | Not Available | Positive | 2009408 - 2010025 | 22350.6 |
| hypothetical protein | CLV88_1058 | Not Available | Negative | 2010096 - 2010314 | 8093.5 |
| arylsulfatase | CLV88_1059 | Not Available | Negative | 2010572 - 2012266 | 62940.9 |
| hypothetical protein | CLV88_10510 | Not Available | Negative | 2012259 - 2012546 | 10765.7 |
| hypothetical protein | CLV88_10511 | Not Available | Positive | 2012675 - 2014093 | 51576.3 |
| hypothetical protein | CLV88_10512 | Not Available | Negative | 2014196 - 2014438 | 8774.6 |
| (2r)-3-sulfolactate dehydrogenase (nadp+) | CLV88_10513 | Not Available | Positive | 2014959 - 2015942 | 34050.7 |
| hypothetical protein | CLV88_10514 | Not Available | Negative | 2015946 - 2016389 | 16080.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
