Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chalcone isomerase-like protein | CLV88_104291 | Not Available | Negative | 1999079 - 1999630 | 20412.8 |
| hypothetical protein | CLV88_104292 | Not Available | Positive | 1999895 - 2000101 | 7005.75 |
| hypothetical protein | CLV88_104293 | Not Available | Positive | 2000098 - 2000475 | 13920.7 |
| chaperonin groel | CLV88_104294 | Not Available | Negative | 2000755 - 2002401 | 57619.2 |
| chaperonin groes | CLV88_104295 | Not Available | Negative | 2002481 - 2002768 | 10125.1 |
| choloylglycine hydrolase | CLV88_104296 | Not Available | Negative | 2003139 - 2004260 | 40089.4 |
| 3-oxoacyl-[acyl-carrier protein] reductase | CLV88_1051 | Not Available | Positive | 2004797 - 2005543 | 25328.1 |
| hypothetical protein | CLV88_1052 | Not Available | Negative | 2005515 - 2005718 | 7386.88 |
| putative acetyltransferase | CLV88_1053 | Not Available | Negative | 2006111 - 2006560 | 16633.8 |
| putative acetyltransferase | CLV88_1054 | Not Available | Negative | 2006660 - 2007097 | 16303.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
