Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_104281 | Not Available | Negative | 1991757 - 1991984 | 8484.14 |
| hsp20 family molecular chaperone ibpa | CLV88_104282 | Not Available | Negative | 1991987 - 1992400 | 15451.4 |
| hypothetical protein | CLV88_104283 | Not Available | Positive | 1992603 - 1992827 | 8455.28 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | CLV88_104284 | Not Available | Positive | 1992910 - 1993401 | 16856.4 |
| 5-(carboxyamino)imidazole ribonucleotide synthase | CLV88_104285 | Not Available | Positive | 1993394 - 1994470 | 38516.1 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | CLV88_104286 | Not Available | Negative | 1994557 - 1995693 | 40188.9 |
| alpha/beta hydrolase family protein | CLV88_104287 | Not Available | Negative | 1995686 - 1996471 | 28727.9 |
| adp-ribose pyrophosphatase yjhb (nudix family) | CLV88_104288 | Not Available | Positive | 1996531 - 1996977 | 16391.4 |
| eama-like transporter family protein | CLV88_104289 | Not Available | Negative | 1997000 - 1997830 | 27824.9 |
| na+/melibiose symporter-like transporter | CLV88_104290 | Not Available | Negative | 1997873 - 1999078 | 41700.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
