Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenylate/guanylate cyclase | CLV88_104271 | Not Available | Positive | 1979918 - 1981594 | 60667.6 |
| sulfate adenylyltransferase | CLV88_104272 | Not Available | Positive | 1981748 - 1983823 | 77134.8 |
| putative enzyme related to lactoylglutathione lyase | CLV88_104273 | Not Available | Positive | 1984320 - 1984712 | 14219.8 |
| bcct, betaine/carnitine/choline family transporter | CLV88_104274 | Not Available | Positive | 1986206 - 1986712 | 19051.7 |
| hypothetical protein | CLV88_104275 | Not Available | Negative | 1986900 - 1987295 | 14342.2 |
| hypothetical protein | CLV88_104276 | Not Available | Negative | 1987362 - 1987463 | 3708.52 |
| hpp family protein | CLV88_104277 | Not Available | Negative | 1987463 - 1987900 | 14730.3 |
| arylsulfatase | CLV88_104278 | Not Available | Negative | 1988210 - 1989649 | 52512.4 |
| hypothetical protein | CLV88_104279 | Not Available | Positive | 1989933 - 1990283 | 12992.3 |
| putative peptidoglycan binding protein | CLV88_104280 | Not Available | Positive | 1990370 - 1991719 | 49523.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
