Shimia abyssi str. DSM 100673

star/dumbbell/pleomorphicaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia abyssi strain DSM 100673 is a Gram-negative, aerobic microbe characterized by its unique star or dumbbell shape and pleomorphic morphology. This organism does not form spores and thrives optimally at a temperature of 25.0°C. Shimia abyssi is classified as an organotroph and chemotroph, indicating its reliance on organic compounds for energy and its ability to oxidize them in the presence of oxygen. The distinct morphology of Shimia abyssi, alongside its metabolic capabilities, suggests that it may occupy specific ecological niches where organic substrates are readily available, potentially within marine environments or other organic-rich habitats. The absence of sporulation may indicate a lifestyle that relies on stable environmental conditions, as sporulation typically serves as a survival strategy in fluctuating environments. Further investigation into its ecological role could provide insights into its interactions with other microorganisms and its contributions to biogeochemical cycles in its native habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia abyssi
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shapestar/dumbbell/pleomorphic
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceorganotroph; chemotroph
PathogenicityNot Available

Genome Summary

Shimia abyssi str. DSM 100673

Accession NumberPYGJ00000000.1

Gene Summary

Adenine Count

1044865 bp

Thymine Count

1029763 bp

Guanine Count

1300044 bp

Cytosine Count

1357929 bp

Genome Length

4732601 bp

Protein-coding Genes

4533 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative tail tape measure proteinCLV88_103227Not Available+1536027 - 153668622517.2
Tail proteinCLV88_103228Not Available+1536702 - 153733423577.5
Minor tail proteinCLV88_103229Not Available+1537334 - 153822132097.5
Phage cell wall peptidaseCLV88_103230Not Available+1538221 - 15384909928.63
Tail proteinCLV88_103231Not Available+1538664 - 154080877113.8
Gene transfer agent-like proteinCLV88_103232Not Available+1540818 - 154288175178.5
Serine acetyltransferaseCLV88_103233Not Available+1543051 - 154385429039.1
pyruvate dehydrogenase e2 component (dihydrolipoamide acetyltransferase)CLV88_103234Not Available-1543907 - 154521145987.4
Putative transketolase central region-containing proteinCLV88_103235Not Available-1545226 - 154660548930.3
enolase-like proteinCLV88_1011Not Available+1 - 1144113.87

Displaying genes 11 – 20 of 4601 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites