Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Shimia abyssi str. DSM 100673
Accession NumberPYGJ00000000.1
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Putative tail tape measure protein | CLV88_103227 | Not Available | + | 1536027 - 1536686 | 22517.2 |
| Tail protein | CLV88_103228 | Not Available | + | 1536702 - 1537334 | 23577.5 |
| Minor tail protein | CLV88_103229 | Not Available | + | 1537334 - 1538221 | 32097.5 |
| Phage cell wall peptidase | CLV88_103230 | Not Available | + | 1538221 - 1538490 | 9928.63 |
| Tail protein | CLV88_103231 | Not Available | + | 1538664 - 1540808 | 77113.8 |
| Gene transfer agent-like protein | CLV88_103232 | Not Available | + | 1540818 - 1542881 | 75178.5 |
| Serine acetyltransferase | CLV88_103233 | Not Available | + | 1543051 - 1543854 | 29039.1 |
| pyruvate dehydrogenase e2 component (dihydrolipoamide acetyltransferase) | CLV88_103234 | Not Available | - | 1543907 - 1545211 | 45987.4 |
| Putative transketolase central region-containing protein | CLV88_103235 | Not Available | - | 1545226 - 1546605 | 48930.3 |
| enolase-like protein | CLV88_1011 | Not Available | + | 1 - 114 | 4113.87 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.