Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_104261 | Not Available | Negative | 1972549 - 1973298 | 27411.5 |
| gscfa family protein | CLV88_104262 | Not Available | Negative | 1973295 - 1974347 | 39261.5 |
| uncharacterized protein duf2834 | CLV88_104263 | Not Available | Negative | 1974475 - 1974792 | 11729.8 |
| hypothetical protein | CLV88_104264 | Not Available | Negative | 1974861 - 1975061 | 6555.99 |
| hypothetical protein | CLV88_104265 | Not Available | Negative | 1975154 - 1975300 | 4943.97 |
| argininosuccinate lyase | CLV88_104266 | Not Available | Negative | 1975297 - 1976688 | 50087.7 |
| thiol-disulfide isomerase/thioredoxin | CLV88_104267 | Not Available | Positive | 1976710 - 1977333 | 22396.8 |
| hypothetical protein | CLV88_104268 | Not Available | Positive | 1977364 - 1977990 | 23149.7 |
| asnc family transcriptional regulator | CLV88_104269 | Not Available | Negative | 1978161 - 1978661 | 18393.1 |
| thioredoxin reductase (nadph) | CLV88_104270 | Not Available | Positive | 1978879 - 1979820 | 33569.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
