Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_104241 | Not Available | Negative | 1951507 - 1951710 | 7568.84 |
| nnru protein | CLV88_104242 | Not Available | Negative | 1951721 - 1952269 | 20028.2 |
| (3s)-malyl-coa thioesterase | CLV88_104243 | Not Available | Negative | 1952304 - 1953158 | 30512.6 |
| hypothetical protein | CLV88_104244 | Not Available | Positive | 1953452 - 1953769 | 10858.1 |
| hypothetical protein | CLV88_104245 | Not Available | Negative | 1953894 - 1954097 | 7161.59 |
| malate dehydrogenase (nad) | CLV88_104246 | Not Available | Positive | 1954307 - 1955269 | 33505.7 |
| succinyl-coa synthetase (adp-forming) beta subunit | CLV88_104247 | Not Available | Positive | 1955612 - 1956805 | 42277.9 |
| hypothetical protein | CLV88_104248 | Not Available | Positive | 1956810 - 1956947 | 4721.74 |
| succinyl-coa synthetase (adp-forming) alpha subunit | CLV88_104249 | Not Available | Positive | 1957129 - 1958010 | 30166.5 |
| 2-oxoglutarate dehydrogenase e1 component | CLV88_104250 | Not Available | Positive | 1958276 - 1961236 | 110536.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
