Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_104231 | Not Available | Negative | 1943035 - 1943889 | 31278.4 |
| uncharacterized protein duf4399 | CLV88_104232 | Not Available | Negative | 1943919 - 1944320 | 13766.1 |
| succinate dehydrogenase subunit b | CLV88_104233 | Not Available | Negative | 1944659 - 1945438 | 29787.1 |
| hypothetical protein | CLV88_104234 | Not Available | Negative | 1945515 - 1946090 | 19355.8 |
| succinate dehydrogenase subunit a | CLV88_104235 | Not Available | Negative | 1946090 - 1947898 | 64980.7 |
| succinate dehydrogenase subunit d | CLV88_104236 | Not Available | Negative | 1947922 - 1948293 | 13315.6 |
| succinate dehydrogenase subunit c | CLV88_104237 | Not Available | Negative | 1948305 - 1948688 | 13844.5 |
| ca-activated chloride channel family protein | CLV88_104238 | Not Available | Negative | 1948970 - 1949644 | 24589.4 |
| putative metallopeptidase duf4344 | CLV88_104239 | Not Available | Negative | 1949712 - 1950467 | 27979.6 |
| l-erythro-3-methylmalyl-coa dehydratase | CLV88_104240 | Not Available | Negative | 1950475 - 1951506 | 37480.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
