Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iclr family transcriptional regulator | CLV88_104221 | Not Available | Negative | 1933371 - 1934165 | 28811.3 |
| carbohydrate abc transporter substrate-binding protein (cut1 family) | CLV88_104222 | Not Available | Positive | 1934316 - 1935638 | 47180.4 |
| carbohydrate abc transporter membrane protein 1 (cut1 family) | CLV88_104223 | Not Available | Positive | 1935720 - 1936613 | 33526.2 |
| carbohydrate abc transporter membrane protein 2 (cut1 family) | CLV88_104224 | Not Available | Positive | 1936619 - 1937482 | 31643.4 |
| carbohydrate abc transporter atp-binding protein (cut1 family) | CLV88_104225 | Not Available | Positive | 1937487 - 1938605 | 40380.0 |
| l-alanine-dl-glutamate epimerase-like enolase superfamily enzyme | CLV88_104226 | Not Available | Positive | 1938608 - 1939720 | 40446.8 |
| l-rhamnose mutarotase | CLV88_104227 | Not Available | Positive | 1939720 - 1940049 | 12965.2 |
| 2-keto-3-deoxy-l-fuconate dehydrogenase | CLV88_104228 | Not Available | Positive | 1940054 - 1940803 | 26122.2 |
| 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase in catechol pathway | CLV88_104229 | Not Available | Positive | 1940822 - 1941664 | 29899.6 |
| l-fuconate dehydratase | CLV88_104230 | Not Available | Positive | 1941664 - 1942953 | 48224.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
