Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 6-phosphogluconate dehydratase | CLV88_104211 | Not Available | Positive | 1920899 - 1922707 | 62614.9 |
| 2-dehydro-3-deoxyphosphogluconate aldolase/(4s)-4-hydroxy-2-oxoglutarate aldolase | CLV88_104212 | Not Available | Positive | 1922712 - 1923359 | 21710.1 |
| lysr family hydrogen peroxide-inducible transcriptional activator | CLV88_104213 | Not Available | Negative | 1923342 - 1924247 | 32944.9 |
| catalase-peroxidase | CLV88_104214 | Not Available | Positive | 1924419 - 1926617 | 79216.1 |
| acetyltransferase (gnat) family protein | CLV88_104215 | Not Available | Positive | 1926653 - 1927897 | 45718.1 |
| polysaccharide deacetylase | CLV88_104216 | Not Available | Positive | 1927894 - 1928880 | 36414.0 |
| 3-deoxy-d-manno-octulosonic-acid transferase | CLV88_104217 | Not Available | Positive | 1928880 - 1930169 | 47309.2 |
| 3-deoxy-d-manno-octulosonic-acid transferase | CLV88_104218 | Not Available | Positive | 1930166 - 1931485 | 48687.3 |
| l-fuconolactonase | CLV88_104219 | Not Available | Negative | 1931528 - 1932352 | 30793.7 |
| d-threo-aldose 1-dehydrogenase | CLV88_104220 | Not Available | Negative | 1932357 - 1933367 | 36106.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
