Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| badm/rrf2 family transcriptional regulator | CLV88_104201 | Not Available | Negative | 1910380 - 1910829 | 16290.8 |
| hypothetical protein | CLV88_104202 | Not Available | Positive | 1910924 - 1911523 | 22267.2 |
| putative lipoprotein | CLV88_104203 | Not Available | Negative | 1911626 - 1912369 | 26485.8 |
| luxr family two component transcriptional regulator | CLV88_104204 | Not Available | Positive | 1912549 - 1913244 | 24783.8 |
| hypothetical protein | CLV88_104205 | Not Available | Positive | 1913283 - 1914479 | 43252.4 |
| hypothetical protein | CLV88_104206 | Not Available | Positive | 1914485 - 1916743 | 82910.0 |
| uncharacterized protein duf4202 | CLV88_104207 | Not Available | Positive | 1916851 - 1917417 | 20982.0 |
| sirohydrochlorin ferrochelatase | CLV88_104208 | Not Available | Positive | 1917420 - 1918124 | 25311.5 |
| laci family transcriptional regulator | CLV88_104209 | Not Available | Negative | 1918121 - 1919122 | 35661.4 |
| glucose-6-phosphate 1-dehydrogenase | CLV88_104210 | Not Available | Positive | 1919400 - 1920851 | 54873.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
