Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_104191 | Not Available | Positive | 1899549 - 1899806 | 9616.77 |
| 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase in catechol pathway | CLV88_104192 | Not Available | Negative | 1900146 - 1900988 | 29906.6 |
| dihydropyrimidine dehydrogenase (nad+) subunit prea | CLV88_104193 | Not Available | Negative | 1902002 - 1903306 | 47056.2 |
| glutamate synthase (nadph/nadh) small chain | CLV88_104194 | Not Available | Negative | 1903325 - 1904647 | 46104.7 |
| putative cold-shock dna-binding protein | CLV88_104195 | Not Available | Positive | 1904950 - 1905156 | 7317.53 |
| putative sos response-associated peptidase yedk | CLV88_104196 | Not Available | Negative | 1905242 - 1905853 | 22496.0 |
| acyl-coa thioesterase-1 | CLV88_104197 | Not Available | Negative | 1905854 - 1906516 | 22836.4 |
| putative abc transport system atp-binding protein | CLV88_104198 | Not Available | Positive | 1906532 - 1907218 | 24163.1 |
| putative abc transport system permease protein | CLV88_104199 | Not Available | Positive | 1907215 - 1909740 | 88374.9 |
| glycine cleavage system h protein | CLV88_104200 | Not Available | Negative | 1909831 - 1910190 | 13250.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
