Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitt/taut family transport system permease protein | CLV88_104181 | Not Available | Negative | 1890328 - 1891173 | 30662.3 |
| nitt/taut family transport system permease protein | CLV88_104182 | Not Available | Negative | 1891170 - 1892102 | 33225.7 |
| ribosomal protein s18 acetylase rimi-like enzyme | CLV88_104183 | Not Available | Negative | 1892099 - 1892536 | 16482.6 |
| nitt/taut family transport system atp-binding protein | CLV88_104184 | Not Available | Negative | 1892523 - 1893326 | 29579.4 |
| putative rmlc-like cupin family protein | CLV88_104185 | Not Available | Positive | 1893359 - 1893772 | 15025.1 |
| dihydropyrimidinase | CLV88_104186 | Not Available | Negative | 1893778 - 1895232 | 52710.3 |
| n-carbamoyl-l-amino-acid hydrolase | CLV88_104187 | Not Available | Negative | 1895435 - 1896685 | 44827.1 |
| tetr family transcriptional regulator | CLV88_104188 | Not Available | Positive | 1896817 - 1897464 | 23827.5 |
| tetr family transcriptional regulator | CLV88_104189 | Not Available | Positive | 1897568 - 1898197 | 23808.6 |
| fucose permease | CLV88_104190 | Not Available | Positive | 1898194 - 1899357 | 39732.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
