Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase | CLV88_104171 | Not Available | Negative | 1880797 - 1882293 | 53769.8 |
| 4-hydroxy-tetrahydrodipicolinate synthase | CLV88_104172 | Not Available | Negative | 1882298 - 1883215 | 33413.2 |
| dihydroxy-acid dehydratase | CLV88_104173 | Not Available | Negative | 1883502 - 1885283 | 63467.7 |
| hypothetical protein | CLV88_104174 | Not Available | Positive | 1885643 - 1885858 | 7820.83 |
| brna antitoxin of type ii toxin-antitoxin system | CLV88_104175 | Not Available | Negative | 1885872 - 1886297 | 16371.4 |
| acyl-coa thioesterase ycia | CLV88_104176 | Not Available | Negative | 1886478 - 1886885 | 14726.8 |
| geranylgeranyl reductase family protein | CLV88_104177 | Not Available | Positive | 1887011 - 1888159 | 42111.7 |
| thioredoxin | CLV88_104178 | Not Available | Negative | 1888196 - 1888627 | 15567.0 |
| dihydrofolate reductase | CLV88_104179 | Not Available | Positive | 1888709 - 1889248 | 19728.6 |
| nitt/taut family transport system substrate-binding protein | CLV88_104180 | Not Available | Negative | 1889300 - 1890289 | 35368.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
