Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_101157 | Not Available | Negative | 158818 - 159033 | 8054.64 |
| trar/dksa family transcriptional regulator | CLV88_101158 | Not Available | Negative | 159088 - 159411 | 12200.5 |
| glyoxylase-like metal-dependent hydrolase (beta-lactamase superfamily ii) | CLV88_101159 | Not Available | Positive | 159563 - 160426 | 31526.3 |
| hypothetical protein | CLV88_101160 | Not Available | Positive | 160467 - 160901 | 14759.8 |
| hypothetical protein | CLV88_101161 | Not Available | Positive | 160901 - 161335 | 15069.7 |
| uncharacterized protein (tigr01244 family) | CLV88_101162 | Not Available | Positive | 161345 - 161773 | 15460.2 |
| flagellar motor switch protein flim | CLV88_101163 | Not Available | Negative | 161747 - 162955 | 43234.4 |
| hypothetical protein | CLV88_101164 | Not Available | Negative | 163013 - 165703 | 96498.0 |
| hypothetical protein | CLV88_101165 | Not Available | Negative | 165703 - 165969 | 10010.3 |
| response regulator receiver domain-containing protein | CLV88_101166 | Not Available | Negative | 165966 - 166334 | 13576.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
