Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr substrate binding domain-containing protein | CLV88_104161 | Not Available | Positive | 1870295 - 1870783 | 18357.3 |
| lysr substrate binding domain-containing protein | CLV88_104162 | Not Available | Positive | 1870752 - 1871204 | 16928.4 |
| phosphonate degradation associated hdig domain protein | CLV88_104163 | Not Available | Negative | 1871941 - 1872534 | 22242.0 |
| gamma-butyrobetaine dioxygenase | CLV88_104164 | Not Available | Negative | 1872531 - 1873679 | 41552.6 |
| lysr family transcriptional regulator | CLV88_104165 | Not Available | Positive | 1873793 - 1874653 | 31342.4 |
| cholesterol transport system auxiliary component | CLV88_104166 | Not Available | Negative | 1874643 - 1875317 | 24221.9 |
| abc-type transporter mla subunit mlad | CLV88_104167 | Not Available | Negative | 1875314 - 1877407 | 73479.0 |
| phospholipid/cholesterol/gamma-hch transport system atp-binding protein | CLV88_104168 | Not Available | Negative | 1877412 - 1878245 | 29740.0 |
| phospholipid/cholesterol/gamma-hch transport system permease protein | CLV88_104169 | Not Available | Negative | 1878245 - 1879369 | 39907.2 |
| glycine/d-amino acid oxidase-like deaminating enzyme | CLV88_104170 | Not Available | Negative | 1879460 - 1880800 | 48342.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
