Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s-adenosylmethionine uptake transporter | CLV88_104151 | Not Available | Negative | 1858491 - 1859294 | 29169.5 |
| glcnac-pi de-n-acetylase | CLV88_104152 | Not Available | Negative | 1859338 - 1861677 | 84776.9 |
| putative nbd/hsp70 family sugar kinase | CLV88_104153 | Not Available | Negative | 1861696 - 1862862 | 41255.7 |
| carbohydrate abc transporter substrate-binding protein (cut1 family) | CLV88_104154 | Not Available | Positive | 1862965 - 1864221 | 45961.2 |
| carbohydrate abc transporter membrane protein 1 (cut1 family) | CLV88_104155 | Not Available | Positive | 1864289 - 1865176 | 33707.9 |
| carbohydrate abc transporter membrane protein 2 (cut1 family) | CLV88_104156 | Not Available | Positive | 1865177 - 1866058 | 33200.3 |
| argininosuccinate lyase | CLV88_104157 | Not Available | Positive | 1866098 - 1867576 | 53267.4 |
| carbohydrate abc transporter atp-binding protein (cut1 family) | CLV88_104158 | Not Available | Positive | 1867579 - 1868637 | 38298.5 |
| sugar/nucleoside kinase (ribokinase family) | CLV88_104159 | Not Available | Positive | 1868634 - 1869497 | 29842.3 |
| Trna-arg | Not Available | Not Available | Positive | 1869792 - 1869869 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
