Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-hydroxyisobutyrate dehydrogenase | CLV88_104141 | Not Available | Negative | 1848898 - 1849860 | 34043.0 |
| maleate isomerase | CLV88_104142 | Not Available | Negative | 1849957 - 1850703 | 25397.6 |
| xaa-pro aminopeptidase | CLV88_104143 | Not Available | Negative | 1850708 - 1851871 | 41106.0 |
| diaminopropionate ammonia-lyase | CLV88_104144 | Not Available | Negative | 1851864 - 1852928 | 36084.5 |
| asnc family transcriptional regulator | CLV88_104145 | Not Available | Positive | 1853053 - 1853517 | 17572.1 |
| putative glyoxalase superfamily protein phnb | CLV88_104146 | Not Available | Positive | 1853577 - 1853966 | 14429.0 |
| ubiquinone/menaquinone biosynthesis c-methylase ubie | CLV88_104147 | Not Available | Positive | 1854184 - 1854972 | 28544.9 |
| isocitrate dehydrogenase | CLV88_104148 | Not Available | Negative | 1855137 - 1857353 | 77986.8 |
| eama-like transporter family protein | CLV88_104149 | Not Available | Positive | 1857614 - 1858027 | 15130.2 |
| hypothetical protein | CLV88_104150 | Not Available | Positive | 1857985 - 1858485 | 17144.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
