Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_104131 | Not Available | Negative | 1838452 - 1839537 | 38800.8 |
| multidrug resistance efflux pump | CLV88_104132 | Not Available | Negative | 1839527 - 1840591 | 37480.8 |
| selenium-binding protein 1 | CLV88_104133 | Not Available | Positive | 1841156 - 1842556 | 52407.7 |
| hypothetical protein | CLV88_104134 | Not Available | Positive | 1842560 - 1843219 | 23139.0 |
| mfs-type transporter involved in bile tolerance (atg22 family) | CLV88_104135 | Not Available | Negative | 1843222 - 1844439 | 43184.4 |
| lysr family transcriptional regulator for mete and meth | CLV88_104136 | Not Available | Negative | 1844504 - 1845415 | 34093.0 |
| 5,10-methylenetetrahydrofolate reductase (nad(p)) | CLV88_104137 | Not Available | Positive | 1845507 - 1846373 | 31420.3 |
| uncharacterized protein (tigr00369 family) | CLV88_104138 | Not Available | Positive | 1846455 - 1846928 | 16428.7 |
| hypothetical protein | CLV88_104139 | Not Available | Positive | 1847069 - 1847779 | 26260.3 |
| integrase/recombinase xerc | CLV88_104140 | Not Available | Positive | 1847776 - 1848690 | 33087.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
